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Best Accounting Software for Subcontractors in 2026

Sarah Martinez December 23, 2025 16 min read
15,000Accounting Software Guide

I spent last month talking to 47 subcontractors about their accounting software. The results surprised me.

Almost half were using spreadsheets or basic consumer tools like QuickBooks Simple Start — software that wasn't designed for construction. They were manually tracking retainage, job costing, and work-in-progress in separate spreadsheets that didn't talk to each other.

The other half used construction-specific accounting software, and while they had more robust systems, many were paying for enterprise features they'd never use.

Finding the right accounting software for your subcontracting business isn't just about features — it's about matching the tool to your size, complexity, and growth plans.

Let me break down what's actually out there and help you make a smarter choice.

What Makes Construction Accounting Different?

Before we dive into specific tools, let's understand why general accounting software often falls short for subcontractors.

Job Costing

You need to track costs against specific jobs, not just general expense categories. A plumber doesn't just have "labor costs" — they have labor costs on Job #1234 vs. Job #1235, and those need to be separately tracked.

Retainage

Standard accounting software doesn't understand that 10% of your invoice isn't actually receivable until project completion. Construction tools track retainage as a separate asset category.

Progress Billing

Billing based on percentage complete, with schedules of values and AIA-format applications, requires specialized functionality.

Work-in-Progress (WIP)

Construction accounting requires WIP reporting to understand true profitability — comparing costs incurred to completion percentage.

Certified Payroll

Public projects require certified payroll reports tracking prevailing wages, fringe benefits, and compliance data.

If your accounting software can't handle these requirements natively, you're building workarounds — and workarounds create errors and eat time.

Tier 1: Entry-Level Options (Under $50/month)

QuickBooks Online (Simple Start or Essentials)

Best for: Solo contractors or very small teams (1-3 people) with simple operations

What works:

  • Intuitive interface that most bookkeepers know
  • Solid invoicing and expense tracking
  • Huge ecosystem of integrations
  • Reasonable price point
  • What's missing:

  • No real job costing (you have to use workarounds)
  • No retainage tracking
  • No construction-specific reporting
  • Progress billing requires manual calculations
  • Cost: $20-55/month depending on tier

    Verdict: Fine for a solo contractor doing small residential jobs. You'll outgrow it quickly if you take on commercial work or scale beyond 2-3 simultaneous projects.

    Wave Accounting

    Best for: Brand new contractors watching every dollar

    What works:

  • Free for basic accounting
  • Simple interface
  • Good invoicing
  • What's missing:

  • No job costing at all
  • No construction features
  • Limited reporting
  • Payroll is a paid add-on
  • Cost: Free (paid add-ons for payroll and payments)

    Verdict: Only if you're just starting out and doing the simplest possible jobs. Plan to upgrade within your first year.

    Tier 2: Mid-Market Solutions ($50-300/month)

    QuickBooks Online Advanced + Job Costing Apps

    Best for: Growing subcontractors (5-20 employees) who want to stay in the QuickBooks ecosystem

    What works:

  • Familiar QuickBooks interface
  • Add-ons like Knowify or Buildertrend add construction features
  • Good integration options
  • Scalable as you grow
  • What's missing:

  • Job costing is still somewhat limited
  • Retainage requires workarounds or add-ons
  • Multiple subscriptions add up
  • Cost: $90-235/month for QuickBooks + $50-200/month for add-ons

    Verdict: A solid middle ground. You get enough construction features without the complexity of full construction software.

    FreshBooks

    Best for: Service-focused contractors who prioritize easy invoicing

    What works:

  • Beautiful invoicing
  • Great mobile experience
  • Easy time tracking
  • Client portal
  • What's missing:

  • No real job costing
  • Not designed for construction
  • Limited payroll options
  • No progress billing
  • Cost: $17-55/month

    Verdict: Better for consultants than subcontractors. Skip unless your work is 100% service-based with no materials.

    Xero + WorkflowMax

    Best for: Subcontractors who want project management and accounting integrated

    What works:

  • Clean interface
  • Project management included
  • Good reporting
  • Strong ecosystem
  • What's missing:

  • Still not construction-specific
  • Retainage requires workarounds
  • Less common than QuickBooks (harder to find bookkeepers)
  • Cost: $13-65/month for Xero + $45/month for WorkflowMax

    Verdict: Worth considering if you value project management integration, but you'll still need construction-specific workarounds.

    Tier 3: Construction-Specific Software ($200-500/month)

    Foundation Software

    Best for: Established subcontractors (10-50 employees) doing commercial work

    What works:

  • True construction accounting
  • Job costing, retainage, WIP built in
  • AIA billing support
  • Certified payroll for public projects
  • Excellent reporting
  • What's missing:

  • Steeper learning curve
  • Higher cost
  • Interface feels dated to some users
  • Cost: $250-500/month depending on modules

    Verdict: This is real construction accounting software. If you're doing commercial work with retainage and progress billing, Foundation handles it properly.

    Sage 100 Contractor (formerly Master Builder)

    Best for: Mid-size to large subcontractors needing comprehensive features

    What works:

  • Complete construction accounting
  • Strong job costing
  • Excellent payroll with certified payroll support
  • Good integration options
  • Scalable to large operations
  • What's missing:

  • Expensive
  • Requires training
  • On-premise versions require IT support
  • Overkill for smaller operations
  • Cost: $300-600/month

    Verdict: Industry standard for a reason. If you're running a serious operation with 20+ employees and complex job costing needs, Sage delivers.

    Jonas Premier

    Best for: Specialty contractors with complex operations

    What works:

  • Deep construction functionality
  • Service management features
  • Equipment tracking
  • Strong for mechanical/electrical contractors
  • What's missing:

  • Complex implementation
  • Higher learning curve
  • Pricing not transparent
  • Cost: Custom pricing (typically $400-800/month)

    Verdict: Excellent if you're a specialty contractor with service agreements, equipment inventory, and complex jobs.

    Tier 4: Enterprise Solutions ($500+/month)

    Viewpoint Vista

    Best for: Large subcontracting operations (50+ employees)

    What works:

  • Enterprise-grade construction accounting
  • Comprehensive project management
  • HR and payroll integration
  • Strong document management
  • What's missing:

  • Expensive
  • Complex implementation (months, not weeks)
  • Requires dedicated administrator
  • Cost: $500-2,000+/month

    Verdict: If you're a large operation with dedicated accounting staff, Viewpoint is excellent. Overkill for smaller operations.

    CMiC

    Best for: Very large contractors with complex enterprise needs

    This is top-tier enterprise software for contractors with 100+ employees and sophisticated needs. If you're reading this article, it's probably not for you yet.

    How to Choose: My Recommendation Framework

    Here's how I'd approach the decision:

    Solo Contractors (1-3 people, under $500K revenue)

    Start with QuickBooks Online Simple Start. Yes, you'll do some job costing in spreadsheets. That's okay for now. Focus on landing work and building your reputation.

    Growing Subcontractors (5-15 people, $500K-$2M revenue)

    QuickBooks Online Advanced + a construction add-on like Knowify. You'll get job costing, better reporting, and features that scale without the complexity of full construction software.

    Established Commercial Subcontractors (15-50 people, $2M-$10M revenue)

    Make the jump to Foundation or Sage 100 Contractor. You need real construction accounting features — retainage tracking, WIP reporting, certified payroll. The learning curve is worth it.

    Large Operations (50+ people, $10M+ revenue)

    You're in enterprise territory. Sage, Viewpoint, or Jonas depending on your specialty. Budget for implementation support.

    Integration Matters More Than Features

    Here's something most software comparisons miss: integration with your other tools often matters more than raw features.

    Your accounting software should talk to:

  • Your invoicing/payment platform
  • Your time tracking system
  • Your project management tools
  • Your payroll provider
  • If you're using SubPaid for invoicing and payment collection, for example, you want that data flowing into your accounting software automatically. Manual data entry creates errors and wastes time.

    Ask about integrations before you buy any accounting software. The prettiest features are worthless if you're re-entering data three times.

    Frequently Asked Questions

    Should I use the same software as my GCs?

    Not necessarily. Your accounting needs are different from theirs. What matters is that you can produce the reports and documents they require (pay apps, lien waivers, etc.).

    How long does implementation take?

    Simple tools: same day. Mid-market: 2-4 weeks. Construction-specific: 1-3 months. Enterprise: 3-6 months.

    Can I switch software mid-year?

    Yes, but it's easier if you switch at year-end when you can start fresh with opening balances. Mid-year switches require careful data migration.

    Should I hire a bookkeeper who knows my software?

    Absolutely. Especially for construction-specific software. A bookkeeper who knows Foundation or Sage will set you up correctly from day one.

    What about industry-specific payroll?

    If you do public projects with prevailing wage requirements, make sure your payroll solution handles certified payroll. This isn't optional — it's legally required.

    Sarah Martinez

    CTO

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